Tidysbml: R/bioconductor package for SBML extraction into dataframes

2024-10-3

iTraNet: A Web-Based Platform for integrated Trans-Omics Network Visualization and Analysis

2024-9-30

RNAelem: An Algorithm for Discovering Sequence-Structure Motifs in RNA Bound by RNA-Binding Proteins

2024-9-28

FAVOR-GPT: A generative Natural Language Interface to Whole Genome Variant Functional Annotations

2024-9-28

How pairs of insertion mutations impact protein structure: An exhaustive computational study

2024-9-27

Chronogram: an R package for data curation and analysis of infection and vaccination cohort studies

2024-9-27

Meeting the Challenge of Genomic Analysis: A Collaboratively Developed Workshop for Pangenomics and Topological Data Analysis

2024-9-23

DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic data

2024-9-20

VCAb: A web-tool for structure-guided exploration of antibodies

2024-9-19

Investigation of protein family relationships with deep learning

2024-9-18

EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery

2024-9-17

Batch-effect correction in single-cell RNA sequencing data using JIVE

2024-9-13

Evaluating GPT and BERT models for Protein-Protein interaction identification in biomedical text

2024-9-11

ZMIX: Estimating ancestry proportions using GWAS association Z-scores

2024-8-29

Utilising biological experimental data and molecular dynamics for the classification of mutational hotspots through machine learning

2024-8-26

Meta-Analysis of RNA Interaction profiles of RNA Binding Protein using the RBPInper tool

2024-8-22

CoNECo: A Corpus for Named Entity Recognition and Normalization of Protein Complexes

2024-8-20

Improving protein function prediction by learning and integrating representations of protein sequences and function labels

2024-8-17

Introducing Field-Programmable Gate Arrays in Genotype Phasing and Imputation

2024-7-30

Investigating Alignment-Free Machine Learning Methods for HIV-1 Subtype Classification

2024-7-29

Knowledge Graph Embeddings in the Biomedical Domain: Are They Useful? A Look at Link Prediction, Rule Learning, and Downstream Polypharmacy Tasks

2024-7-17

Perspectives on tracking data reuse across biodata resources

2024-4-25

MerCat2: a versatile <i>k</i>-mer counter and diversity estimator for database-independent property analysis obtained from omics database

2024-4-23

Making mouse transcriptomics deconvolution accessible with immunedeconv

2024-2-28

Trackplot: a fast and lightweight R script for epigenomic enrichment plots

2024-2-26

Novel symmetry-preserving neural network model for phylogenetic inference

2024-2-17

CMAT: ClinVar Mapping and Annotation Toolkit

2024-2-7

Joint Regression Analysis of Multiple Traits Based on Genetic Relationships

2024-1-4

HiTaxon: a hierarchical ensemble framework for taxonomic classification of short reads

2024-1-1

ZygosityPredictor

2024-1-1

Text-mining-based feature selection for anticancer drug response prediction

2024-1-1

Optimal Linear Ensemble of Binary Classifiers

2024-1-1

ginmappeR: an unified approach for integrating gene and protein identifiers across biological sequence databases

2024-1-1

ClusterV-Web: a user-friendly tool for profiling HIV quasispecies and generating drug resistance reports from nanopore long-read data

2024-1-1

TWCOM: an R package for inference of cell–cell communication on spatially resolved transcriptomics data

2024-1-1

survivalContour: Visualizing predicted survival via colored contour plots

2024-1-1

<i>Splicekit</i>: An integrative toolkit for splicing analysis from short-read RNA-seq

2024-1-1

TOSCCA: A framework for interpretation and testing of sparse canonical correlations

2024-1-1

Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning

2024-1-1

<tt>racoon_clip</tt>—a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data

2024-1-1

Predicting evolutionary targets and parameters of gene deletion from expression data

2024-1-1

Advancements in bioinformatics and computational biology: 15th annual Polish Bioinformatic Society Symposium

2024-1-1

BioNexusSentinel: a visual tool for bioregulatory network and cytohistological RNA-Seq genetic expression profiling within the context of multicellular simulation research using ChatGPT-Augmented software engineering

2024-1-1

Demultiplexing of Single-Cell RNA sequencing data using interindividual variation in gene expression

2024-1-1

SlowMoMan: A web app for discovery of important features along user-drawn trajectories in 2D embeddings

2024-1-1

INCAWrapper: a Python wrapper for INCA for seamless data import, -export, and -processing

2024-1-1

ScyNet: Visualising interactions in community metabolic models

2024-1-1

Mining drug-target interactions from biomedical literature using chemical and gene descriptions-based ensemble transformer model

2024-1-1

Genotype imputation in F2 crosses of inbred lines

2024-1-1

MMDRP: drug response prediction and biomarker discovery using multi-modal deep learning

2024-1-1