The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense

2024-10-2

Quantitative evaluation of DNA damage repair dynamics to elucidate predictors of autism vs. cancer in individuals with germline PTEN variants

2024-10-2

Building, benchmarking, and exploring perturbative maps of transcriptional and morphological data

2024-10-1

Why aphid virus retention needs more attention: Modelling aphid behaviour and virus manipulation in non-persistent plant virus transmission

2024-10-1

Spatial distribution of poultry farms using point pattern modelling: A method to address livestock environmental impacts and disease transmission risks

2024-10-1

Quantitative modeling of signaling in aggressive B cell lymphoma unveils conserved core network

2024-10-1

Exploring the potential of structure-based deep learning approaches for T cell receptor design

2024-9-30

A new approach to Health Benefits Package design: an application of the Thanzi La Onse model in Malawi

2024-9-30

Study of impacts of two types of cellular aging on the yeast bud morphogenesis

2024-9-30

HIPI: Spatially resolved multiplexed protein expression inferred from H&E WSIs

2024-9-30

BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks

2024-9-30

Managing spatio-temporal heterogeneity of susceptibles by embedding it into an homogeneous model: A mechanistic and deep learning study

2024-9-30

Effect of aberrant fructose metabolism following SARS-CoV-2 infection on colorectal cancer patients’ poor prognosis

2024-9-27

GPMelt: A hierarchical Gaussian process framework to explore the dark meltome of thermal proteome profiling experiments

2024-9-27

Integrating dynamic models and neural networks to discover the mechanism of meteorological factors on Aedes population

2024-9-27

The role of training variability for model-based and model-free learning of an arbitrary visuomotor mapping

2024-9-27

Emergent ecological patterns and modelling of gut microbiomes in health and in disease

2024-9-27

HELP: A computational framework for labelling and predicting human common and context-specific essential genes

2024-9-27

Celebrating a body of work

2024-9-26

Impact of occluder device configurations in in-silico left atrial hemodynamics for the analysis of device-related thrombus

2024-9-26

A hierarchy of metabolite exchanges in metabolic models of microbial species and communities

2024-9-26

The refinement paradox and cumulative cultural evolution: Complex products of collective improvement favor conformist outcomes, blind copying, and hyper-credulity

2024-9-26

Language models outperform cloze predictability in a cognitive model of reading

2024-9-25

Hyperdimensional computing: A fast, robust, and interpretable paradigm for biological data

2024-9-24

GenoTriplo: A SNP genotype calling method for triploids

2024-9-24

Distribution of calbindin-positive neurons across areas and layers of the marmoset cerebral cortex

2024-9-23

Characterizing the dynamics, reactivity and controllability of moods in depression with a Kalman filter

2024-9-23

A retrospective assessment of forecasting the peak of the SARS-CoV-2 Omicron BA.1 wave in England

2024-9-23

The neural dynamics associated with computational complexity

2024-9-23

Impact of phylogeny on the inference of functional sectors from protein sequence data

2024-9-23

Ten quick tips for ensuring machine learning model validity

2024-9-19

Ten simple rules for successfully carrying out funded research projects

2024-9-19

Correction: Projecting contact matrices in 177 geographical regions: An update and comparison with empirical data for the COVID-19 era

2024-9-18

Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks

2024-9-18

Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections

2024-9-17

Measuring and understanding information storage and transfer in a simulated human gut microbiome

2024-9-17

Accurate multi-population imputation of MICA, MICB, HLA-E, HLA-F and HLA-G alleles from genome SNP data

2024-9-16

The neglected giants: Uncovering the prevalence and functional groups of huge proteins in proteomes

2024-9-16

Facilitating pathway and network based analysis of RNA-Seq data with pathlinkR

2024-9-16

Insights into muscle metabolic energetics: Modelling muscle-tendon mechanics and metabolic rates during walking across speeds

2024-9-13

AnophelesModel: An R package to interface mosquito bionomics, human exposure and intervention effects with models of malaria intervention impact

2024-9-13

Noise leads to the perceived increase in evolutionary rates over short time scales

2024-9-13

An exploration into CTEPH medications: Combining natural language processing, embedding learning, in vitro models, and real-world evidence for drug repurposing

2024-9-12

Ten simple rules for training scientists to make better software

2024-9-12

Shedding light on blue-green photosynthesis: A wavelength-dependent mathematical model of photosynthesis in Synechocystis sp. PCC 6803

2024-9-12

Comparison and benchmark of deep learning methods for non-coding RNA classification

2024-9-12

Design and implementation of an asynchronous online course-based undergraduate research experience (CURE) in computational genomics

2024-9-12

Calibrating dimension reduction hyperparameters in the presence of noise

2024-9-12

SEMbap: Bow-free covariance search and data de-correlation

2024-9-11

Creating cell-specific computational models of stem cell-derived cardiomyocytes using optical experiments

2024-9-11